Fragment functions#

experimental.import_10x_fragments(input, output)

Convert 10x fragment file to BPCells format

experimental.build_cell_groups(fragments, ...)

Build cell_groups array for use in pseudobulk_insertion_counts()

experimental.pseudobulk_insertion_counts(...)

Calculate a pseudobulk coverage matrix

experimental.precalculate_insertion_counts(...)

Precalculate per-base insertion counts from fragment data

experimental.PrecalculatedInsertionMatrix(path)

Disk-backed precalculated insertion matrix