bpcells.experimental.PrecalculatedInsertionMatrix.get_counts

PrecalculatedInsertionMatrix.get_counts(regions: DataFrame)

Load pseudobulk insertion counts

Parameters:

regions (pandas.DataFrame) – Pandas dataframe with columns (chrom, start, end) representing genomic ranges (0-based, end-exclusive like BED format). All regions must be the same size. chrom should be a string column; start/end should be numeric.

Returns:

Numpy array of dimensions (region, psudobulks, position) and type numpy.int32

Return type:

numpy.ndarray