Mapping of the canonical gene symbols corresponding to each unambiguous alias, previous symbol, ensembl ID, or entrez ID.
Format
human_gene_mapping
A named character vector. Names are aliases or IDs and values are the corresponding canonical gene symbol
mouse_gene_mapping
A named character vector. Names are aliases or IDs and values are the corresponding canonical gene symbol
Source
human_gene_mapping
http://ftp.ebi.ac.uk/pub/databases/genenames/hgnc/tsv/non_alt_loci_set.txt
mouse_gene_mapping
http://www.informatics.jax.org/downloads/reports/MGI_EntrezGene.rpt http://www.informatics.jax.org/downloads/reports/MRK_ENSEMBL.rpt
Details
See the source code in data-raw/human_gene_mapping.R and
data-raw/mouse_gene_mapping.R for exactly how these mappings were made.
Examples
#######################################################################
## human_gene_mapping
head(human_gene_mapping)
#> 0808y08y 1 1-8D 1-8U 1-Cys 1/2-SBSRNA4
#> "NFYC-AS1" "A1BG" "IFITM2" "IFITM3" "PRDX6" "SEC24B-AS1"
#######################################################################
#######################################################################
## mouse_gene_mapping
head(mouse_gene_mapping)
#> (ACTbEGFP)10sb (CAM)alpha1B-AR
#> "Tg(CAG-EGFP)1Osb" "Tg(CAMalpha1b)7Wjk"
#> (CaMKII)Cre2834 (G2019S) LRRK2
#> "Tg(Camk2a-cre)2834Lusc" "Tg(PDGFB-LRRK2*G2019S)32Hlw"
#> (G93A)Tg+ (H163R) PS-1 YAC
#> "Tg(SOD1*G93A)1Gur" "Tg(PSEN1H163R)G9Btla"
