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Plot transcript models

Source: R/trackplots.R
trackplot_gene.Rd

Plot transcript models

Usage

trackplot_gene(
  transcripts,
  region,
  exon_size = 3,
  gene_size = 1,
  label_size = 3,
  return_data = FALSE
)

Arguments

transcripts

GRanges, list, or data.frame of transcript features to plot. Required attributes are:

  • chr, start, end: genomic position

  • strand: "+"/"-" or TRUE/FALSE for positive or negative strand

  • feature (only entries marked as "transcript" or "exon" will be considered)

  • transcript_id

  • gene_name See genomic-ranges for more details

region

GRanges of length 1 with region to plot, or list/data.frame with one entry each for chr, start, end. See gene_region() or genomic-ranges for details

exon_size

size for exon lines

label_size

size for transcript labels

return_data

If true, return data from just before plotting rather than a plot.

labels

Character vector with labels for each item in transcripts. NA for items that should not be labeled

transcript_size

size for transcript lines

Value

Plot of gene locations